euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

2023 Dec : Holiday 2023 Genomics Puzzle
2023 Jul : Gnodes 2023 early draft on major contents in animal and plant genomes
2022 May : Gnodes draft publication is now available
2021 Feb : Genome Depth Estimator for animals & plants
2020 Dec : Daphnia species genomes 2020 update
2020 Mar : EvidentialGene major update
2019 Oct : Gene Reconstruction Filters draft paper
2019 May : SRA2Genes Test Drive
2019 Mar.: moved to jetstream indiana and google iowa farms
2018 Jul.: Evigene 2018 of Sus scrofa pig
2018 Jan.: Animal & Plant Evigene constructions surpass NCBI, Ensembl, Maker, PacBio and Trinity methods for Arabidopsis, Corn, White fly, Water flea, Zebrafish
2017 Dec.: Evigene 2017 of Danio rerio zebrafish
2017 Dec.: Evigene 2017 of Lytechinus variegatus green sea urchin
2017 Nov.: Evigene 2017 genes of Daphnia pulex water flea
2017 June: Evigene set for Bemisia tabaci whitefly crop pest
2017 May : Evigene set for Arabidopsis th. model plant
2016 : Evigene gene sets for Zea mays corn plant, Anopheles and Aedes mosquitos, and Pine trees
2015 : Evigene gene-ome set for Daphnia magna , and for Atlantic Killifish
2014 : EvidentialGene sets are Best of clade in gene set completeness for Arthropods, Plants and Fishes .
2014 : Evigene gene-ome sets for Honey Bee, Deer Tick, and Tribolium Beetle are publicly available.
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[DIR] Parent Directory 23-Apr-2019 15:32 [DIR] about/ 25-Jan-2023 12:42 [DIR] arthropods/ 14-Mar-2021 16:09 [DIR] daphnia/ 12-Jun-2023 21:42 [DIR] evigene/ 14-Aug-2022 12:41 [DIR] inverts/ 14-Dec-2017 17:23 [DIR] other/ 23-Feb-2021 22:12 [DIR] plants/ 21-May-2017 19:09 [DIR] vertebrates/ 25-Mar-2019 14:06

Folder evigene/ contains this software, about/ describes this work, in posters and documents. Evigene software archives, best way to fetch, are in /EvidentialGene/other/evigene_old/. The other folders contain gene-ome sets of animals and plants, constructed with EvidentialGene software. Some of these are chromosome-free, others are mixed chromosome-guided and mRNA-assembled.

See also EvidentialGene @ and ask questions, discuss at EvidentialGene @ Google Groups

2016: EvidentialGene Explained at Galaxy & GMOD conference, 2016 June

EvidentialGene mRNA Transcript Assembly Software

2013: Gene-omes built from mRNA-seq not genome DNA

Independent comparison of EvidentialGene_trassembly doi: 10.1371/journal.pone.0091776

2012: Perfect Genes Constructed with Gigabases of RNA

EvidentialGene Animal & Plant Genes Quality Comparison

EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

EvidentialGene comes in two flavors, Evigene-G following the genome-gene modeling paradigm, and Evigene-R following the gene assembly from RNA paradigm (see Evg-G/R workflow figures 1A,1B): Evigene-G algorithm is summarize at Perfect Genes Constructed with Gigabases of RNA . Evigene-R algorithm is summarize at Gene-omes built from mRNA-seq not genome DNA .       Development of Evigene-H hybrid of the two is in progress.

        Don Gilbert, gilbertd at indiana edu         home at

Evigene-G and Evigene-R Pipelines Workflow Summary
Evigene-G Workflow Details

Developed at the Genome Informatics Lab of Indiana University Biology Department