euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

2018 Jul.: Evigene 2018 of Sus scrofa pig
2018 Jan.: Animal & Plant Evigene constructions surpass NCBI, Ensembl, Maker, PacBio and Trinity methods for Arabidopsis, Corn, White fly, Water flea, Zebrafish
2017 Dec.: Evigene 2017 of Danio rerio zebrafish
2017 Dec.: Evigene 2017 of Lytechinus variegatus green sea urchin
2017 Nov.: Evigene 2017 genes of Daphnia pulex water flea
2017 June: Evigene set for Bemisia tabaci whitefly crop pest
2017 May : Evigene set for Arabidopsis th. model plant
2016 Dec.: Evigene Pine tree genes surpass genome models, Trinity and PacBio methods for ortho-completeness
2016 Sep.: Evigene draft gene set for Zea mays corn plant
2016 Mar.: Evigene draft gene sets for two Anopheles and Aedes mosquito
2015: Evigene gene-ome set for Daphnia magna , and for Atlantic Killifish
2014 : EvidentialGene sets are Best of clade in gene set completeness for Arthropods, Plants and Fishes . 2015-Mar update.
2014 : Evigene gene-ome sets for Honey Bee, Deer Tick, and Tribolium Beetle are publicly available.
2014 : Evigene sets for Cacao and Killifish are Best of clade for gene set completeness (size, orthology) for plants and fishes.
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[DIR] Parent Directory 19-Mar-2015 00:56 [DIR] cacao/ 30-Jul-2014 13:32 [DIR] arthropods/ 21-May-2017 19:09 [DIR] plants/ 21-May-2017 19:09 [DIR] daphnia/ 11-Dec-2017 13:32 [DIR] inverts/ 14-Dec-2017 17:23 [DIR] other/ 14-Jan-2018 07:56 [DIR] vertebrates/ 25-Jun-2018 14:17 [DIR] evigene/ 10-Sep-2018 16:26 [DIR] about/ 07-Feb-2019 13:55

Folder evigene/ contains this software, about/ describes this work, in posters and documents. Evigene software archives, best way to fetch, are in /EvidentialGene/other/evigene_old/. The other folders contain gene-ome sets of animals and plants, constructed with EvidentialGene software. Some of these are chromosome-free, others are mixed chromosome-guided and mRNA-assembled.

See also EvidentialGene @ and ask questions, discuss at EvidentialGene @ Google Groups

2016: EvidentialGene Explained at Galaxy & GMOD conference, 2016 June

EvidentialGene mRNA Transcript Assembly Software

2013: Gene-omes built from mRNA-seq not genome DNA

Independent comparison of EvidentialGene_trassembly doi: 10.1371/journal.pone.0091776

2012: Perfect Genes Constructed with Gigabases of RNA

EvidentialGene Animal & Plant Genes Quality Comparison

EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

EvidentialGene comes in two flavors, Evigene-G following the genome-gene modeling paradigm, and Evigene-R following the gene assembly from RNA paradigm (see Evg-G/R workflow figures 1A,1B): Evigene-G algorithm is summarize at Perfect Genes Constructed with Gigabases of RNA . Evigene-R algorithm is summarize at Gene-omes built from mRNA-seq not genome DNA .       Development of Evigene-H hybrid of the two is in progress.

        Don Gilbert, gilbertd at indiana edu         home at

Evigene-G and Evigene-R Pipelines Workflow Summary
Evigene-G Workflow Details

Developed at the Genome Informatics Lab of Indiana University Biology Department