euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

2017 Nov.: Evigene 2017 genes of Daphnia pulex water flea
2017 June: Evigene set for Bemisia tabaci whitefly crop pest
2017 May : Evigene set for Arabidopsis th. model plant
2017 Apr.: Recent Plant & Animal Evigene constructions surpass PacBio, Maker, NCBI and Trinity methods for Arabidopsis, Corn plants, White fly, Water flea
2016 Dec.: Evigene Pine tree genes surpass genome models, Trinity and PacBio methods for ortho-completeness
2016 Sep.: Evigene draft gene set for Zea mays corn plant
2016 Mar.: Evigene draft gene sets for two Anopheles and Aedes mosquito
2015: Evigene gene-ome set for Daphnia magna , and for Atlantic Killifish
2014 : EvidentialGene sets are Best of clade in gene set completeness for Arthropods, Plants and Fishes . 2015-Mar update.
2014 : Evigene gene-ome sets for Honey Bee, Deer Tick, and Tribolium Beetle are publicly available.
2014 : Evigene sets for Cacao and Killifish are Best of clade for gene set completeness (size, orthology) for plants and fishes.

      Name                    Last modified       

[DIR] Parent Directory 19-Mar-2015 00:56 [DIR] vertebrates/ 22-Feb-2016 15:30 [DIR] plants/ 21-May-2017 19:09 [DIR] other/ 15-Aug-2016 21:15 [DIR] killifish/ 14-Jul-2015 14:16 [DIR] evigene/ 15-Nov-2013 21:47 [DIR] daphnia/ 11-Dec-2017 13:32 [DIR] cacao/ 30-Jul-2014 13:32 [DIR] arthropods/ 21-May-2017 19:09 [DIR] about/ 08-Jun-2017 21:14

Folder evigene/ contains this software, about/ describes this work, in posters and documents. Evigene software archives, best way to fetch, are in /EvidentialGene/other/evigene_old/. The other folders contain gene-ome sets of animals and plants, constructed with EvidentialGene software. Some of these are chromosome-free, others are mixed chromosome-guided and mRNA-assembled.

See also EvidentialGene @ Sourceforge.net

 
2016: EvidentialGene Explained at Galaxy & GMOD conference, 2016 June

EvidentialGene mRNA Transcript Assembly Software

2013: Gene-omes built from mRNA-seq not genome DNA
Evigene-mRNA

Independent comparison of EvidentialGene_trassembly doi: 10.1371/journal.pone.0091776

2012: Perfect Genes Constructed with Gigabases of RNA

EvidentialGene Animal & Plant Genes Quality Comparison
evigenequal1


EvidentialGene : Evidence Directed Gene Construction for Eukaryotes

EvidentialGene comes in two flavors, Evigene-G following the genome-gene modeling paradigm, and Evigene-R following the gene assembly from RNA paradigm (see Evg-G/R workflow figures 1A,1B): Evigene-G algorithm is summarize at Perfect Genes Constructed with Gigabases of RNA . Evigene-R algorithm is summarize at Gene-omes built from mRNA-seq not genome DNA .       Development of Evigene-H hybrid of the two is in progress.

        Don Gilbert, gilbertd at indiana edu         home at http://eugenes.org/EvidentialGene/

Evigene-G and Evigene-R Pipelines Workflow Summary
Evigene-G Workflow Details

Developed at the Genome Informatics Lab of Indiana University Biology Department