EvidentialGene: Orthology completeness of Arthropod gene assemblies Alignment score summary table for all species gene sets 2015-Mar update, Don Gilbert # head *-refarp7s10fset1-bidtab.arpitab66algn | cut -f1-4,12-15,17-21 ==> apismel4set-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=9151, ngroup=9151, ncomgrp=8723, ncomgrphit=6931 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest amelevg14 8431 92.1 94.4 102.0 711.0 543.0 85.4 940 4974 630 387 85.3 apimel1 8028 87.7 92.3 97.5 659.5 494.9 78.2 112 3995 2291 533 59.3 apimel14nc 7926 86.6 90.3 100.6 678.4 513.8 80.6 165 5146 951 669 76.6 apismel45 8400 91.8 95.0 98.9 691.1 524.3 83.0 120 4806 1659 346 71.1 ==> beetle4enoculset-refarp7s8set2-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden2, iscore=4 # ref: ARP7f, ngene=9444, ngroup=9444, ncomgrp=8723, ncomgrphit=7032 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest tribcas1 8459 89.6 93.6 94.7 520.9 480.5 74.6 110 4300 2173 449 62.7 tribcas14nc 8610 91.2 95.1 92.9 545.2 503.5 78.4 118 5386 1180 348 78.3 tribcas4a 8603 91.1 94.5 96.5 533.7 493.8 76.6 78 4944 1623 387 71.4 tribcas4evg2 8672 91.8 95.3 93.7 549.6 517.6 80.0 1052 5156 493 331 88.3 ==> daphnia4-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=9654, ngroup=9654, ncomgrp=8723, ncomgrphit=7179 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest daphniamag 7852 81.3 87.1 98.8 413.6 429.0 67.1 231 3242 2779 927 48.4 dapmaevg14 8688 90.0 93.8 106.4 470.3 489.2 77.2 1442 3802 1490 445 73.0 dapplx10evg 8527 88.3 93.1 100.7 445.8 458.5 73.8 523 3736 2427 493 59.3 dapplxjgiv11 7942 82.3 88.5 88.0 412.8 404.4 66.3 171 3025 3155 828 44.5 ==> daphmag2set-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=9042, ngroup=9042, ncomgrp=8723, ncomgrphit=6908 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest daphniamag 7852 86.8 90.5 98.9 430.1 448.0 70.1 674 3468 2107 659 60.0 dapmaevg14 8688 96.1 97.4 106.6 489.1 510.9 80.7 2766 3468 496 178 90.2 ==> daphplx3set-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=8874, ngroup=8874, ncomgrp=8723, ncomgrphit=6889 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest dapplx10evg 8527 96.1 97.1 101.2 469.2 485.1 78.2 2111 4179 400 199 91.3 dapplxjgiv11 7942 89.5 92.4 88.4 434.1 426.1 70.1 27 4641 1694 527 67.8 dapplxjgiv12 7928 89.3 92.1 89.2 434.9 427.5 70.3 42 4686 1617 544 68.6 ==> dromel3set-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=8252, ngroup=8252, ncomgrp=8723, ncomgrphit=6601 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest drosmel548n 8153 98.8 99.3 108.8 519.5 518.5 84.1 148 6361 43 49 98.6 drosmelr4 7952 96.4 97.2 107.6 502.7 499.3 81.2 53 5787 576 185 88.5 drosmelr5 8148 98.7 99.3 108.5 517.9 516.6 84.0 13 6381 158 49 96.9 ==> tick4set-refarp7s10fset1-bidtab.arpitab66algn <== # summary for bidtab.arpbest66iden, iscore=4 # ref: ARP7f, ngene=9583, ngroup=9583, ncomgrp=8723, ncomgrphit=7064 [1] ................ tspp tng png pncom dhit bcom acom pcom best same diff miss pbest ixodes 7031 73.4 78.7 79.3 298.5 308.6 52.7 704 1128 3730 1502 25.9 ixotickevg14 7392 77.1 82.0 101.0 400.8 424.9 65.2 2077 2009 1703 1275 57.8 tetur 6258 65.3 75.1 92.7 286.9 318.7 53.1 875 238 4192 1759 15.8 ztickevg13 6345 66.2 72.1 93.5 332.7 344.9 55.3 1182 1552 2361 1969 38.7