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Index of /EvidentialGene/arthropods/deertick

      Name                            Last modified       Size  

[DIR] Parent Directory 21-May-2017 19:09 - [DIR] ixotick1evg1/ 30-Jun-2015 21:46 - [TXT] ixodes14-evgmrna-biosamples.txt 05-Apr-2014 13:15 4k

mRNA Transcript assemblies for black-legged tick (deer tick)
organism=Ixodes scapularis
http://arthropods.eugenes.org/EvidentialGene/arthropods/deertick/
version 1 (2014 April)
Don Gilbert, gilbertd near indiana edu

EvidentialGene: Gene-omes from mRNA-seq assembly overtake genome gene-predictions.
An existing dogma in genome projects, that quality of a gene set is dependent on the 
quality of the genome assembly, is no longer accurate.  mRNA-seq assembly now does as well 
or better than genome-gene modelling.

  Gene set completeness for mRNA-genes and Genome-genes of Ticks
      Human genes found (n=16631)
geneset         hit%    alnh    alnt    Gene set method, species
................................................................
ixodes.evg      95.7    434     415     mRNA-assembly, deer tick  (Evigene 2014.04 rough draft)
ztick.evg       91.4    416     380     mRNA-assembly, zebra tick (Evigene 2013.06 version 1)
ixodes.gno      89.5    364     326     genome-predict, deer tick
tetur.gno       83.2    399     332     genome-predict, spider mite
................................................................
   hit%= percent of ref genes found
   alnh= alignment average, for hit genes
   alnt= alignment average, for all ref genes



Developed at the Genome Informatics Lab of Indiana University Biology Department