#m2t: EvidentialGene mrna2tsa.pl VERSION 2014.05.21
#m2t: evigeneapp=prot/traa2cds.pl, path=/N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl
#m2t: evigeneapp=rnaseq/asmrna_trimvec.pl, path=/N/hd00/gilbertd/Mason/bio/evigene/scripts/rnaseq/asmrna_trimvec.pl
#m2t: evigeneapp=rnaseq/asmrna_altreclass.pl, path=/N/hd00/gilbertd/Mason/bio/evigene/scripts/rnaseq/asmrna_altreclass.pl
#m2t: BEGIN with input= evg3hbee.trclass date= Thu Jun  5 12:52:37 EDT 2014
#m2t: CMD= /N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl -utrorf -trout -aa ./okayset/evg3hbee.okay.aa.utrorf -out stdout -cdna ./okayset/evg3hbee.okay.tr.gz ./dropset/evg3hbee.drop.tr.gz >> ./okayset/evg3hbee.utrorf.mrna
#m2t: CMD= /N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl -utrorf -trout -aa ./okayset/evg3hbee.okalt.aa.utrorf -out stdout -cdna ./okayset/evg3hbee.okalt.tr.gz ./dropset/evg3hbee.drop.tr.gz >> ./okayset/evg3hbee.utrorf.mrna
#m2t: getmRNA_utrorf n=295375 in ./okayset/evg3hbee.utrorf.mrna
#m2t: Make mRNA publicset/evg3hbee.mrna from okayset transcripts
#m2t: evigeneapp=prot/traa2cds.pl, path=/N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl
#m2t: CMD= /N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl -trout -nomiss  -cdna ./okayset/evg3hbee.okay.tr.gz -aa ./okayset/evg3hbee.okay.aa.gz -out stdout >> publicset/evg3hbee.mrna
#m2t: CMD= /N/hd00/gilbertd/Mason/bio/evigene/scripts/prot/traa2cds.pl -trout -nomiss  -cdna ./okayset/evg3hbee.okalt.tr.gz -aa ./okayset/evg3hbee.okalt.aa.gz  -out stdout >> publicset/evg3hbee.mrna
#m2t: CMD= cat ./okayset/evg3hbee.utrorf.mrna >> publicset/evg3hbee.mrna
#m2t: add ./okayset/evg3hbee.utrorf.mrna to publicset/evg3hbee.mrna
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc10935t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc112923t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc129895t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc134382t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc15306t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc1928t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc20344t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc23608t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc34465t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc38463t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc54333t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc55475t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc60381t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc69867t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc72869t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc839t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc94745t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk25loc96266t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc129279t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc141644t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc15254t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc15967t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc17530t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc24250t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc24485t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc29112t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc349432t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc846t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk31loc89996t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc111272t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc111309t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc124852t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc22816t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc2348t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc27024t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc4692t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc49140t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc49797t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc5450t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc80018t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk45loc99402t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc109896t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc13176t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc25820t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc4024t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc42801t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc512t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk55loc65585t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc14866t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc196764t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc202262t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc3219t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc50635t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc650t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc69022t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nsoapk65loc89662t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc10021t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc1182t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc1437t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc14691t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc18720t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc1977t13utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc19845t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc30520t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc455t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc4789t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc54t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc5557t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc5557t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc5617t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc56801t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc6253t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc6503t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc7139t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc7185t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc7678t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc8379t7utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc9449t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk29Loc9861t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc10891t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc11674t7utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc1413t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc1588t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc16139t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc1723t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc1866t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc2156t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc4145t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc4358t9utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc4408t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc45t19utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc5041t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc577t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc6718t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc7256t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc8607t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc9507t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk35Loc9898t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc10572t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc10697t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc1131t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc13274t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc1632t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc16617t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc23229t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc24758t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc33167t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc3655t13utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc4081t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc442t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc46133t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc4811t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc500t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc6628t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc7869t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc8287t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc864t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk45Loc8673t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc10010t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc10077t16utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc2099t16utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc2633t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc29463t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc445t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc587t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc7336t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk55Loc9043t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc10931t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc11677t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc17634t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc462t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc5504t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc5616t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc7885t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ab2nvelvk61Loc8983t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p3soapk31loc13662t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p3soapk31loc52847t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p3soapk31loc56t25utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p3soapk45loc16853t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p3soapk65loc2t75utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p4trinloc75122c1t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf3p8velvk75Loc1644t12utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bf6p5avelvk91Loc13924t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bn5p4soapk31loc10478t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bn5p4soapk55loc52576t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bn5p4soapk75loc20730t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1bn5p4soapk75loc5826t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk47Loc3293t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk47Loc5322t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk47Loc9063t12utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk47Loc9383t7utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk57Loc12306t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk57Loc12486t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk61Loc3446t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk61Loc491t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk69Loc11125t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk69Loc32t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk69Loc5221t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk69Loc8228t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk75Loc15708t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1brainorm14velvk75Loc19043t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f2ads1velvk65Loc7949t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f2ads1velvk75Loc166t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f2ads1velvk85Loc13965t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm4trinloc64848c0t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk29Loc14621t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk29Loc269t50utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk29Loc9t22265utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk37Loc133t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk37Loc3t101utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk37Loc49t12utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1f3brainm9tvelvk37Loc8t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm4nsoapk25loc11477t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm4nsoapk31loc4834t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk27Loc2149t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk27Loc4983t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc1168t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc1471t6utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc1878t12utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc1t14utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc252t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk31Loc370t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk35Loc1830t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk35Loc1941t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk35Loc1t13utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk35Loc47t8utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk35Loc570t69utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk45Loc27t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk45Loc746t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1fatnorm5nvelvk55Loc2554t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk25loc11887t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk25loc17790t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk25loc34326t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk31loc117508t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk31loc29136t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk31loc52619t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk45loc18492t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk45loc6200t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc12996t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc13518t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc14173t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc159t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc1695t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc2036t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc22028t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc43949t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk55loc647t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk75loc2191t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk75loc32814t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n2ads1soapk75loc38t9utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk29Loc500t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk29Loc712t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk29Loc832t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk29Loc9t27007utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk29Loc9t27362utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc4505t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc5623t11utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc5t8456utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc660t7utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc71t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk35Loc769t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1n3brainm8nvelvk45Loc31t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb11velvk85Loc109t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb11velvk85Loc8728t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb11velvk91Loc4901t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb1soapk25loc75471t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb1soapk45loc27173t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb1soapk65loc738t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb1soapk75loc581t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nb1soapk75loc6892t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1nf1brainorm28uvelvk73Loc3187t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui454nsoapk25loc12049t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui454nsoapk25loc5999t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui454nsoapk25loc6607t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk27Loc1t13338utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk31Loc788t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk37Loc3516t9utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk37Loc39t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk47Loc58t10utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk57Loc2097t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk63Loc2750t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk71Loc1256t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk71Loc2768t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1ui455avelvk75Loc1342t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc10942t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc21519t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc34507t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc36867t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc39660t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk25loc62623t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk27loc13101t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk27loc14198t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk27loc20803t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk27loc34857t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk27loc6331t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc13738t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc14870t5utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc2337t13utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc3565t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc37459t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk31loc480t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk45loc14380t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk45loc2664t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk55loc424t35utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk55loc507t2utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4nsoapk65loc34717t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4trinloc52569c0t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4trinloc59135c2t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4trinloc61199c3t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm4trinloc61292c0t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk35Loc12771t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk35Loc808t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk45Loc5473t14utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk45Loc8601t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk55Loc1080t12utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk55Loc6502t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk61Loc2344t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm5nvelvk61Loc518t32utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc131t18utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc144t14utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc5t15897utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc5t30005utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc5t40646utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc5t41523utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc63t4utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc6811t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk27Loc7182t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk45Loc4075t3utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk45Loc438t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk55Loc1201t16utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk63Loc2415t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk63Loc8584t1utrorf: .aa .cds
#m2t: ERR:getmRNA-misspart hbee1uinorm8nvelvk75Loc22301t1utrorf: .aa .cds
#m2t: getmRNA publicset/mrna,aa,cds nid= 295082
#m2t: get_evgtrset= publicset/evg3hbee.mrna . evg3hbee
#m2t: sra_result from ./sra_result.csv nresult= .
#m2t: info updated 0 TSADESC= -w ./evgr_tsamethods.cmt -Y ./evgr_tsadesc.cmt -t ./evgr_tsasubmit.sbt
#m2t: trclass2maintab: dropset adds 4708686
#m2t: trclass2maintab primary n= 105133 allntr= 295375 evg3hbee.pubids
#m2t: CMD= /N/hd00/gilbertd/Mason/bio/evigene/scripts/rnaseq/asmrna_altreclass.pl -trclass evg3hbee.trclass -pubids evg3hbee.pubids -altrenum -debug -noclass=60 -out evg3hbee.pubids.realt > evg3hbee.pubids.realt.log 2>&1
#m2t: #altreclass: nin/out=295375/295375, ndrop/keep=34264/261111, nrenum=119839, ngenediff=27706/105133 log=evg3hbee.pubids.realt.log
#m2t: names ./evg3hbee.names n=143663
#m2t: publicset:  publicset/evg3hbee.mrna_pub.fa publicset/evg3hbee.aa_pub.fa publicset/evg3hbee.cds_pub.fa publicset/evg3hbee.ann.txt
#m2t: mrna2tsa.info:
m2t.BioProject=
m2t.DATE=20140605
m2t.IDPREFIX=Apimel3aEVm
m2t.MAXGAP=15
m2t.MINSIZE=200
m2t.TSADESC=-w ./evgr_tsamethods.cmt -Y ./evgr_tsadesc.cmt -t ./evgr_tsasubmit.sbt
m2t.genenames=./evg3hbee.names
m2t.mrna=publicset/evg3hbee.mrna
m2t.organism=Daphnia_magna
m2t.sraids=SRR000000
m2t.trclass=evg3hbee.trclass
#m2t: tidy: n= 4 publicset/evg3hbee.mainalt.tab publicset/evg3hbee.pubids publicset/evg3hbee.pubids.old publicset/evg3hbee.pubids.realt.log
#m2t: tidy: n= 0
#m2t: tidy: n= 3 tmpfiles/evg3hbee.mrna tmpfiles/evg3hbee.aa tmpfiles/evg3hbee.cds
#m2t: DONE at date= Thu Jun  5 13:04:56 EDT 2014
#m2t: ======================================