set qset=`ls ../trset[34]/aaset/*aa.qual` env main=0 $evigene/scripts/prot/aastat.sh $qset > ../aastat34.info ..... ... #...../trset3/ #soaphbee1bf3p3 nt=578829; average=3006; median=2646; min,max=2189,11159; nfull=964; sum=3006669; gaps=11913,11.9 #soaphbee1bn5p4 nt=500702; average=2966; median=2618; min,max=2132,11209; nfull=945; sum=2966154; gaps=9702,9.7 #soaphbee1uinorm4n nt=393000; average=3269; median=2928; min,max=2388,8941; nfull=917; sum=3269047; gaps=13900,13.9 #trinhbee1bf3p4 nt=462257; average=2580; median=2407; min,max=1953,13304; nfull=905; sum=2580350; gaps=0,0 #trinhbee1uinorm3 nt=253206; average=2256; median=2061; min,max=1740,5080; nfull=761; sum=2256621; gaps=0,0 #trinhbee1uinorm4 nt=664488; average=2835; median=2602; min,max=2301,5107; nfull=873; sum=2835458; gaps=0,0 #velvhbee1bf3p6k4 nt=225526; average=3057; median=2588; min,max=2113,10168; nfull=927; sum=3057842; gaps=3126,3.1 #velvhbee1bf6p5a nt=207196; average=3160; median=2775; min,max=2276,9269; nfull=918; sum=3160493; gaps=3827,3.8 #velvhbee1bn5p6 nt=118235; average=2531; median=2200; min,max=1761,5709; nfull=890; sum=2531292; gaps=2902,2.9 #velvhbee1uinorm5n nt=423918; average=4561; median=3926; min,max=3315,16920; nfull=940; sum=4561389; gaps=1978,1.9 #...../trset4/ #soaphbee1f3brainm4n nt=275675; average=2126; median=1905; min,max=1525,5645; nfull=927; sum=2126693; gaps=8105,8.1 #soaphbee1ui454n nt=192639; average=3202; median=2887; min,max=2237,12149; nfull=971; sum=3202302; gaps=15837,15.8 #trinhbee1f3brainm4 nt=724365; average=2578; median=2514; min,max=2008,5025; nfull=889; sum=2578594; gaps=0,0 #trinhbee1ui454 nt=148156; average=2913; median=2625; min,max=1969,16851; nfull=891; sum=2913465; gaps=0,0 #velvhbee1bf3p8 nt=279872; average=3300; median=2814; min,max=2276,10487; nfull=888; sum=3300396; gaps=81,0 #velvhbee1brainorm8n nt=146598; average=2138; median=1816; min,max=1469,12408; nfull=913; sum=2138370; gaps=45,0 #velvhbee1f3brainm8t nt=429606; average=3376; median=2935; min,max=2400,16513; nfull=927; sum=3376774; gaps=0,0 #velvhbee1f3brainm9t nt=529161; average=3538; median=3049; min,max=2497,16513; nfull=936; sum=3538712; gaps=0,0 #velvhbee1n3brainm8n nt=402675; average=3450; median=2937; min,max=2357,16513; nfull=951; sum=3450608; gaps=10,0 #velvhbee1nf1brainorm28n nt=203834; average=2077; median=1810; min,max=1480,9903; nfull=911; sum=2077611; gaps=0,0 #velvhbee1nf1brainorm28t nt=243554; average=2568; median=2224; min,max=1806,9904; nfull=893; sum=2568556; gaps=0,0 #velvhbee1nf1brainorm28u nt=300494; average=2669; median=2350; min,max=1913,9905; nfull=936; sum=2669011; gaps=2,0 #velvhbee1uinorm8n nt=407666; average=4326; median=3728; min,max=3056,16923; nfull=956; sum=4326620; gaps=252,0.2 ........ evg3hbee: add evg2hbee/okset + trset[34]/ ls ../trset[34]/*.tr.gz ../trset3/soaphbee1bf3p3.tr.gz ../trset4/soaphbee1ui454n.tr.gz ../trset3/soaphbee1bn5p4.tr.gz ../trset4/velvhbee1brainorm8n.tr.gz ? ../trset3/trinhbee1bf3p4.tr.gz ../trset4/velvhbee1f3brainm8t.tr.gz - ../trset3/trinhbee1uinorm3.tr.gz- ../trset4/velvhbee1f3brainm9t.tr.gz + ../trset3/trinhbee1uinorm4.tr.gz+ ../trset4/velvhbee1n3brainm8n.tr.gz + ../trset3/velvhbee1bf3p6.tr.gz - ../trset4/velvhbee1nf1brainorm28n.tr.gz - ../trset3/velvhbee1bf3p6k45.tr.gz- ../trset4/velvhbee1nf1brainorm28t.tr.gz - ../trset3/velvhbee1bf6p5a.tr.gz ../trset4/velvhbee1nf1brainorm28u.tr.gz + ../trset3/velvhbee1bn5p6.tr.gz ../trset4/velvhbee1uinorm8n.tr.gz ../trset4/velvhbee1bf3p8.tr.gz+ replaces ../trset3/velvhbee1bf3p6,p6k45 ../trset4/aaset/soaphbee1f3brainm4n.aa.qual + ../trset4/aaset/trinhbee1f3brainm4.aa.qual + #--------------- # start w/ evg2hbee/okayset/ 119046 ../evg2hbee/okayset/evg2hbee.okalt.aa.qual 90131 ../evg2hbee/okayset/evg2hbee.okay.aa.qual 209177 total # add to evg3hbee this nset=16, ntr=5001158, trset[34]: /bin/ls -1 ../trset[34]/*.tr.gz | egrep -v 'trinhbee1uinorm3.tr|velvhbee1f3brainm8t.tr|velvhbee1nf1brainorm28n.tr|velvhbee1nf1brainorm28t.tr|velvhbee1bf3p6.tr|velvhbee1bf3p6k45.tr' ../trset3/soaphbee1bf3p3.tr.gz ../trset3/soaphbee1bn5p4.tr.gz ../trset3/trinhbee1bf3p4.tr.gz ../trset3/trinhbee1uinorm4.tr.gz ../trset3/velvhbee1bf6p5a.tr.gz ../trset3/velvhbee1bn5p6.tr.gz ../trset4/soaphbee1f3brainm4n.tr.gz ../trset4/soaphbee1ui454n.tr.gz ../trset4/trinhbee1f3brainm4.tr.gz ../trset4/trinhbee1ui454.tr.gz ../trset4/velvhbee1bf3p8.tr.gz ../trset4/velvhbee1brainorm8n.tr.gz ../trset4/velvhbee1f3brainm9t.tr.gz ../trset4/velvhbee1n3brainm8n.tr.gz ../trset4/velvhbee1nf1brainorm28u.tr.gz ../trset4/velvhbee1uinorm8n.tr.gz #--------------- ==> ../trset3/soaphbee1bf3p3.trformat.log <== #trf: ntotal=537386, output=soaphbee1bf3p3.tr ==> ../trset3/soaphbee1bn5p4.trformat.log <== #trf: ntotal=456728, output=soaphbee1bn5p4.tr ==> ../trset3/trinhbee1bf3p4.trformat.log <== #trf: ntotal=364122, output=trinhbee1bf3p4.tr ==> ../trset3/trinhbee1uinorm4.trformat.log <== #trf: ntotal=469427, output=trinhbee1uinorm4.tr ==> ../trset3/velvhbee1bf6p5a.trformat.log <== #trf: ntotal=180309, output=velvhbee1bf6p5a.tr ==> ../trset3/velvhbee1bn5p6.trformat.log <== #trf: ntotal=105278, output=velvhbee1bn5p6.tr ==> ../trset4/soaphbee1f3brainm4n.trformat.log <== #trf: ntotal=259925, output=soaphbee1f3brainm4n.tr ==> ../trset4/soaphbee1ui454n.trformat.log <== #trf: ntotal=177310, output=soaphbee1ui454n.tr ==> ../trset4/trinhbee1f3brainm4.trformat.log <== #trf: ntotal=535098, output=trinhbee1f3brainm4.tr ==> ../trset4/trinhbee1ui454.trformat.log <== #trf: ntotal=123990, output=trinhbee1ui454.tr ==> ../trset4/velvhbee1bf3p8.trformat.log <== #trf: ntotal=245402, output=velvhbee1bf3p8.tr ==> ../trset4/velvhbee1brainorm8n.trformat.log <== #trf: ntotal=133224, output=velvhbee1brainorm8n.tr ==> ../trset4/velvhbee1f3brainm9t.trformat.log <== #trf: ntotal=456490, output=velvhbee1f3brainm9t.tr ==> ../trset4/velvhbee1n3brainm8n.trformat.log <== #trf: ntotal=344236, output=velvhbee1n3brainm8n.tr ==> ../trset4/velvhbee1nf1brainorm28u.trformat.log <== #trf: ntotal=267306, output=velvhbee1nf1brainorm28u.tr ==> ../trset4/velvhbee1uinorm8n.trformat.log <== #trf: ntotal=344927, output=velvhbee1uinorm8n.tr #total nsets=16; ntr=5001158 .......