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Index of /EvidentialGene/arthropods/mosquito/aedes_aegypti/evg12aedes/mapto_aedes4hic_gasm

      Name                             Last modified       Size  

[DIR] Parent Directory 12-Jun-2017 15:56 - [   ] evg12aedes-aedes4hic.gmap.gff.gz 28-Apr-2017 20:01 37.7M [TXT] evg12aedes-aedes4hic.map.attr 28-Apr-2017 20:02 20.8M

Evigene aedes.aeg. genes mapped to aedes_aegypti GSE95797_AaegL4  chromosome assembly (2017.03)

evg12aedes-aedes4hic.map.attr = summary of location, map quality per mRNA
evg12aedes-aedes4hic.gmap.gff = GFF format locations of mRNA, from GMAP alignment

Chromosome map qualities compared, from evigene gene mapping, chrasm V3 to V4

        n       cov     pid     nex     npaths
V3      110021  94.8    97.2    4.8     C1:2426,C2:320,C3:6063,M:11220,U:89992
V4      109350  95.6    97.2    5.6     C1:2956,C2:1736,C3:2823,M:10520,U:91315
 n= n mappings, cov=coverage of mRNA on chrasm, pid = percent ident, nex = ave exons/mRNA-mapped
 npaths = mapping mistakes: C1=local mismap, C2=same-scaffold distant split, C3=cross-scaffold split gene
 M=multiple mappings, U=unique,full mapping


Developed at the Genome Informatics Lab of Indiana University Biology Department