Index of /EvidentialGene/arthropods/nasoniawasp/refseq

 Name                         Last modified       Size  

 Parent Directory             25-Mar-2019 14:24      -  
 nasvit2to1.readme.txt        27-Oct-2011 12:29     2k  
 nvit2_ncbigno.asm1remap.gff  27-Oct-2011 12:13  25.6M  
 nvit2_ncbigno.asm1remap.tab  27-Oct-2011 12:15   2.4M  
 nvit2_ncbiref.aa.gz          23-Oct-2011 14:45   3.9M  
 nvit2_ncbiref.asm1remap.gff  27-Oct-2011 11:57  16.9M  
 nvit2_ncbiref.asm1remap.tab  27-Oct-2011 12:12   1.2M  
 nvit2_ncbiref.idtab          27-Oct-2011 12:18   866k  
 nvit2_ncbiref.splitgenes.gff 31-Oct-2011 21:18    87k  
 nvit2_ncbiref.splitgenes.ids 28-Oct-2011 18:45     1k  
 nvit2_ncbiref.tr.gz          24-Oct-2011 13:28   9.0M  

This gene location set has been remapped from assembly 2.1 to assembly 1 (same as OGS1) of Nasonia
nvit2_ncbigno.asm1remap.gff,tab

using  transcript sequence gmapped to assembly 1, then evigene/scripts/asm21align.pl
to match transcript.asm1.gff to genes.asm2.gff.   Results include NO_CHANGE (90% at same scaffold loc),
SHIFTED (moved to asm1 scaffold by shifting entire gene model with a constant offset), 
ERROR (failed to correctly match by shifting locations)

nvit2_ncbiref.asm1remap.gff
   28 ERROR_ALIGN_ERROR
  517 ERROR_NOT_FOUND_overgene  : includes tRNA, ncRNA, non-mRNA missed in transcript mapping
  127 ERROR_SHIFTED  : shifted but some shift error, includes small Scaffold changes mostly
  297 OK_NOSHIFT
10888 OK_NO_CHANGE
  309 OK_ODDSHIFT
 1330 OK_SHIFTED      : valid shifted loci

======================================================================
Organism: Nasonia vitripennis (jewel wasp)
NCBI Build Number: 2
Version: 1
Release date: 28 September 2011

Freeze date for component genomic sequences: 26 February 2010
Freeze date for other genomic sequences: 23 August 2011
Freeze date for mRNAs/ESTs used for annotation: 23 August 2011

This build consists of a reference assembly for the whole genome.
No alternate assemblies were included in this build.

Assemblies in NCBI Build 2.1:

* Nvit_2.0 (GCF_000002325.2)
Genomic DNA sequence released by the Baylor College of Medicine Human 
Genome Sequencing Center (February 2010) (see        http://www.hgsc.bcm.tmc.edu/projects/nasonia/) and used as the 
reference assembly for chromosome 1-5.

======================================================================
Note:
The mapview directory will be populated when annotation build 2.1 
is displayed in MapViewer at
  http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=7425
MapViewer files for annotation build 1.1 can be found in the ARCHIVE
directory under BUILD.1.1/mapview
======================================================================