Index of /EvidentialGene/arthropods/tigershrimp/shrimpt1eg6

 Name                          Last modified       Size  

 Parent Directory              30-Jun-2015 22:31      -  
 allstrimpt1.egtrimvec.log     08-Jun-2013 21:26   307k  
 allstrimpt1.mrna2tsa.info     09-Jun-2013 17:34     1k  
 allstrimpt1.mrna2tsa.log      09-Jun-2013 19:09     5k  
 allstrimpt1.names.gz          06-May-2013 23:43   3.9M  
 allstrimpt1.sra_result.csv    27-Feb-2013 23:05     2k  
 allstrimpt1.tr2aacds.info.txt 29-May-2013 13:39     1k  
 allstrimpt1.tr2aacds.log      04-Mar-2013 02:00     2k  
 allstrimpt1.trclass.gz        04-Mar-2013 01:24   8.1M  
 allstrimpt1.vector.tab        11-May-2013 15:49    52k  
 publicset/                    30-Jun-2015 22:32      -  
 submitset/                    10-Jun-2013 00:40      -  

mRNA Transcript assemblies for tiger shrimp
organism=Penaeus monodon
http://arthropods.eugenes.org/EvidentialGene/arthropods/tigershrimp
Version 1 (2013)  mRNA assembly
by Don Gilbert, gilbertd at indiana edu

This is a 'reference-free' gene set assembly from mRNA-seq, without reference made to
a genome assembly nor training/mapping from other species genes. As such it has different 
values than genome-based gene sets, one important one is no external artifacts or errors 
contribute to these genes.  Any protein orthology measured has not been influenced by 
gene modelling using other species (with their artifacts), and genome assembly errors.

This gene set is used in
 Faddeeva A, Studer RA, Kraaijeveld K, Sie D, Ylstra B, Mariën J, et al. (2015) Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life. PLoS ONE 10(6): e0130600. doi:10.1371/journal.pone.0130600