#m2t: EvidentialGene mrna2tsa.pl VERSION 2014.05.21 #m2t: evigeneapp=prot/traa2cds.pl, path=/home/ux455375/bio/evigene/scripts/prot/traa2cds.pl #m2t: evigeneapp=rnaseq/asmrna_trimvec.pl, path=/home/ux455375/bio/evigene/scripts/rnaseq/asmrna_trimvec.pl #m2t: evigeneapp=rnaseq/asmrna_altreclass.pl, path=/home/ux455375/bio/evigene/scripts/rnaseq/asmrna_altreclass.pl #m2t: BEGIN with input= evg2tribol.trclass date= Tue Dec 9 10:31:36 PST 2014 #m2t: CMD= /home/ux455375/bio/evigene/scripts/prot/traa2cds.pl -utrorf -trout -aa ./okayset/evg2tribol.okay.aa.utrorf -out stdout -cdna ./okayset/evg2tribol.okay.tr ./dropset/evg2tribol.drop.tr >> ./okayset/evg2tribol.utrorf.mrna #m2t: CMD= /home/ux455375/bio/evigene/scripts/prot/traa2cds.pl -utrorf -trout -aa ./okayset/evg2tribol.okalt.aa.utrorf -out stdout -cdna ./okayset/evg2tribol.okalt.tr ./dropset/evg2tribol.drop.tr >> ./okayset/evg2tribol.utrorf.mrna #m2t: getmRNA_utrorf n=378003 in ./okayset/evg2tribol.utrorf.mrna #m2t: Make mRNA publicset/evg2tribol.mrna from okayset transcripts #m2t: evigeneapp=prot/traa2cds.pl, path=/home/ux455375/bio/evigene/scripts/prot/traa2cds.pl #m2t: CMD= /home/ux455375/bio/evigene/scripts/prot/traa2cds.pl -trout -nomiss -cdna ./okayset/evg2tribol.okay.tr -aa ./okayset/evg2tribol.okay.aa -out stdout >> publicset/evg2tribol.mrna #m2t: CMD= /home/ux455375/bio/evigene/scripts/prot/traa2cds.pl -trout -nomiss -cdna ./okayset/evg2tribol.okalt.tr -aa ./okayset/evg2tribol.okalt.aa -out stdout >> publicset/evg2tribol.mrna #m2t: CMD= cat ./okayset/evg2tribol.utrorf.mrna >> publicset/evg2tribol.mrna #m2t: add ./okayset/evg2tribol.utrorf.mrna to publicset/evg2tribol.mrna #m2t: ERR:getmRNA-misspart tcas4cr12p11nm9velvk73Loc1187t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6soapk25loc11392t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6soapk25loc24329t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6soapk25loc5323t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6tvelvk47Loc2507t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6tvelvk47Loc8207t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1c6tvelvk57Loc3466t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk47Loc1005t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk47Loc2777t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk47Loc5657t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk47Loc5965t9utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk47Loc6658t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk61Loc16t1207utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk61Loc368t15utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1i2velvk87Loc5855t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3soapk25loc12919t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3soapk25loc7680t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3soapk31loc1544t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3soapk31loc9743t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3velvk75Loc3041t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1p3velvk83Loc734t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1pc1velvk37Loc1t206utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1pc1velvk37Loc8773t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1pc1velvk47Loc1895t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1pc1velvk47Loc3t105utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr1pc1velvk57Loc4158t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr0785lsoapk27loc30081t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1085lsoapk27loc21940t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1085lsoapk27loc5573t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1285lsoapk27loc1488t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1285lsoapk27loc5131t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1315lsoapk27loc76525t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1345lsoapk27loc14878t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1345lsoapk27loc621t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr1345lsoapk31loc13673t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr5085lsoapk31loc9013t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr5115lsoapk27loc11361t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr25lsr5115lsoapk31loc10233t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2g9sr108g9velvk83Loc8950t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2g9sr128g9velvk83Loc736t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2g9sr137g9velvk83Loc1900t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2g9sr137g9velvk83Loc3399t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk27loc3152t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk27loc34080t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk31loc5895t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk31loc9665t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk35loc28950t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk35loc39320t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmsoapk55loc58400t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc23479c0t50utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc24175c0t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc26297c0t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc27185c0t15utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc28028c0t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmtrinloc28202c0t16utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1383t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1503t8utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1734t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1t2331utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1t4498utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc1t7361utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc203t8utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc2164t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc227t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc2473t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc24t65utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc265t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc2743t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc290t9utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc302t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc3219t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc348t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc348t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc354t26utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc361t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc521t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc5584t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc692t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc712t7utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc783t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk31Loc935t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc1271t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc1305t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc1503t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc1596t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc1760t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc188t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc220t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc38t288utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc38t291utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc38t292utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc39t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc689t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc722t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk37Loc87t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk47Loc137t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk47Loc6651t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk47Loc7899t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk61Loc7112t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk67Loc338t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4cr2p8nmvelvk75Loc5992t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb12p11nm9velvk65Loc4266t5utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb12p11nm9velvk73Loc3796t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb12p11nm9velvk75Loc5657t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb12p11nm9velvk83Loc716t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb1p3soapk25loc21210t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb25lsr1245lsoapk31loc1435t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb25lsr1415lsoapk31loc2345t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2c6soapk65loc15879t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2g9sr124g9velvk65Loc519t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2g9sr124g9velvk73Loc1220t7utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2g9sr515g9velvk65Loc6916t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2o6soapk65loc200t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc1062t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc111t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc115t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc131t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc155t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc1618t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc167t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc16t8052utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc16t8475utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc2786t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc2840t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc3703t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc3t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc519t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc74t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc78t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk29Loc922t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk35Loc332t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk35Loc705t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk35Loc89t3738utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk35Loc934t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk45Loc145t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p6nm1velvk45Loc2337t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc110t17utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1119t11utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1190t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1219t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1267t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1289t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1322t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc13555t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc155t20utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc155t25utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc164t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1680t9utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t10108utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t10163utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t1506utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t1966utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t2026utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t5680utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc1t8711utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc2038t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc2340t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc2823t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc2897t8utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc324t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc328t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc328t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc333t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc336t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc343t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc34t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc359t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc409t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc431t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc445t7utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc483t36utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc49t58utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc5180t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc531t5utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc598t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc6236t5utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc651t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc917t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk27Loc991t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1127t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1156t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1253t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1270t6utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1754t5utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1766t3utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1t1403utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc1t5620utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc2167t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc354t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc384t4utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc406t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc489t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc511t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc75t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc770t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc8184t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc8507t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc940t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk31Loc9t22utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc1435t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc1t9177utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc2121t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc2409t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc2t54utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc54t113utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc842t10utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk37Loc95t1utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk57Loc169t2utrorf: .aa .cds #m2t: ERR:getmRNA-misspart tcas4sb2p8nmvelvk71Loc21462t1utrorf: .aa .cds #m2t: getmRNA publicset/mrna,aa,cds nid= 377794 #m2t: get_evgtrset= publicset/evg2tribol.mrna . evg2tribol #m2t: sra_result from ./sra_result.csv nresult= . #m2t: info updated 0 TSADESC= -w ./evgr_tsamethods.cmt -Y ./evgr_tsadesc.cmt -t ./evgr_tsasubmit.sbt #m2t: Missing product -names ./evg2tribol.names #m2t: trclass2maintab: dropset adds 3473406 #m2t: trclass2maintab primary n= 33534 allntr= 378003 evg2tribol.pubids #m2t: CMD= /home/ux455375/bio/evigene/scripts/rnaseq/asmrna_altreclass.pl -trclass evg2tribol.trclass -pubids evg2tribol.pubids -altrenum -debug -noclass=60 -out evg2tribol.pubids.realt > evg2tribol.pubids.realt.log 2>&1 #m2t: #altreclass: nin/out=378003/378003, ndrop/keep=67030/310973, nrenum=289873, ngenediff=14175/33534 log=evg2tribol.pubids.realt.log #m2t: names n=0 #m2t: publicset: publicset/evg2tribol.mrna_pub.fa publicset/evg2tribol.aa_pub.fa publicset/evg2tribol.cds_pub.fa publicset/evg2tribol.ann.txt #m2t: mrna2tsa.info: m2t.BioProject= m2t.DATE=20141209 m2t.IDPREFIX=Tribca2aEVm m2t.MAXGAP=15 m2t.MINSIZE=200 m2t.TSADESC=-w ./evgr_tsamethods.cmt -Y ./evgr_tsadesc.cmt -t ./evgr_tsasubmit.sbt m2t.genenames= m2t.mrna=publicset/evg2tribol.mrna m2t.organism=Tribolium_castaneum m2t.sraids=SRR000000 m2t.trclass=evg2tribol.trclass #m2t: tidy: n= 4 publicset/evg2tribol.mainalt.tab publicset/evg2tribol.pubids publicset/evg2tribol.pubids.old publicset/evg2tribol.pubids.realt.log #m2t: tidy: n= 0 #m2t: tidy: n= 3 tmpfiles/evg2tribol.mrna tmpfiles/evg2tribol.aa tmpfiles/evg2tribol.cds #m2t: DONE at date= Tue Dec 9 10:44:37 PST 2014 #m2t: ======================================