Index of /EvidentialGene/arthropods/zebratick/ztick4eg6

 Name                             Last modified       Size  

 Parent Directory                 30-Jun-2015 22:47      -  
 publicset/                       30-Jun-2015 22:46      -  
 submitset/                       10-Jun-2013 00:40      -  
 ztick4cvel_pt3.egtrimvec.log     08-Jun-2013 20:41    82k  
 ztick4cvel_pt3.mrna2tsa.info     09-Jun-2013 17:42     1k  
 ztick4cvel_pt3.mrna2tsa.log      09-Jun-2013 19:26     5k  
 ztick4cvel_pt3.names.gz          06-May-2013 23:59   2.1M  
 ztick4cvel_pt3.sra_result.csv    22-Apr-2013 20:29     1k  
 ztick4cvel_pt3.tr2aacds.info.txt 29-May-2013 13:34     1k  
 ztick4cvel_pt3.tr2aacds.log      01-May-2013 04:36     8k  
 ztick4cvel_pt3.trclass.gz        01-May-2013 04:32  11.9M  
 ztick4cvel_pt3.vector.tab        05-May-2013 17:02     1k  

mRNA Transcript assemblies for zebra tick
organism=Rhipicephalus pulchellus
http://arthropods.eugenes.org/EvidentialGene/arthropods/zebratick/
version 1 (2013 jun)
Don Gilbert, gilbertd near indiana edu

EvidentialGene: Gene-omes from mRNA-seq assembly overtake genome gene-predictions.
An existing dogma in genome projects, that quality of a gene set is dependent on the 
quality of the genome assembly, is no longer accurate.  mRNA-seq assembly now does as well 
or better than genome-gene modelling.

  Gene set completeness for mRNA-genes and Genome-genes of Ticks
      Human genes found (n=16631)
geneset         hit%    alnh    alnt    Gene set method, species
................................................................
ixodes.evg      95.7    434     415     mRNA-assembly, deer tick  (Evigene 2014.04 rough draft)
ztick.evg       91.4    416     380     mRNA-assembly, zebra tick (Evigene 2013.06 version 1)
ixodes.gno      89.5    364     326     genome-predict, deer tick
tetur.gno       83.2    399     332     genome-predict, spider mite
................................................................
   hit%= percent of ref genes found
   alnh= alignment average, for hit genes
   alnt= alignment average, for all ref genes