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Daphnia genome assemblies 2023

Daphnia genome assemblies, 2023 assessment, in-progress results
Don Gilbert, http://wfleabase.org/genome/Daphnia_species_genomes23a/

NOTE 2023-April: These are in-progress results, this snapshot will not be preserved and should not be relied on as vetted results.
Rough taxa distances (cf. Ebert+ 2019 paper)
     |.... Daphnia magna (Europe, N.Am.): 3+ chr-assemblies, annotated genes 
 ----|
  |  |.... Daphnia carinata (Australia) : 1 chr-assembly 
  |    |.. Daphnia sinensis (China ?)   : 1 chr-assembly
  |    |.. Daphnia similoides (China ?) : annotated genes mapped to D.sinens
  |
  |....... Daphnia galeata     : chrasm 133 mb, gnodes: 160-200+ Mb (poor gdna)
  |
  |....... Daphnia obtusa      : chrasm 168 mb, Pacbio, not public, Illum DNA 14 Gb
       |.. Daphnia pulex (N. America)   : 3+ chr-assemblies, annotated genes
        |. Daphnia pulicaria (N. America): 2 chr-assemblies, annotated genes
      Name                    Last modified       Size  Description

[DIR] Parent Directory 12-Jun-2023 14:07 - [DIR] docs/ 22-Aug-2023 08:03 - [DIR] gdata/ 12-Jun-2023 21:10 - [DIR] genes/ 11-Apr-2023 13:17 - [DIR] gnodes/ 06-Apr-2023 20:06 - [DIR] gnodes_newasm/ 06-Aug-2023 15:17 - [DIR] ncbigenomes/ 05-Apr-2023 11:41 -


Developed at the Genome Informatics Lab of Indiana University Biology Department