Daphnia genome assemblies 2023

Daphnia genome assemblies, 2023 assessment, in-progress results
Don Gilbert, http://wfleabase.org/genome/Daphnia_species_genomes23a/

NOTE 2023-April: These are in-progress results, this snapshot will not be preserved and should not be relied on as vetted results.

Rough taxa distances (cf. Ebert+ 2019 paper)

     |.... Daphnia magna (Europe, N.Am.): 3+ chr-assemblies, annotated genes 
 ----|
  |  |.... Daphnia carinata (Australia) : 1 chr-assembly 
  |    |.. Daphnia sinensis (China ?)   : 1 chr-assembly
  |    |.. Daphnia similoides (China ?) : annotated genes mapped to D.sinens
  |
  |....... Daphnia galeata     : chrasm 133 mb, gnodes: 160-200+ Mb (poor gdna)
  |
  |....... Daphnia obtusa      : chrasm 168 mb, Pacbio, not public, Illum DNA 14 Gb
       |.. Daphnia pulex (N. America)   : 3+ chr-assemblies, annotated genes
        |. Daphnia pulicaria (N. America): 2 chr-assemblies, annotated genes

 Name                    Last modified       Size  Description

 Parent Directory        12-Jun-2023 14:07      -  
 ncbigenomes/            05-Apr-2023 11:41      -  
 gnodes/                 06-Apr-2023 20:06      -  
 genes/                  11-Apr-2023 13:17      -  
 gdata/                  12-Jun-2023 21:10      -  
 gnodes_newasm/          13-Oct-2023 15:14      -  
 docs/                   21-Dec-2023 20:31      -

Developed at the Genome Informatics Lab of Indiana University Biology Department