Guide to Daphnia_magna Evigene annotation table columns and GFF mRNA  attributes:

  PredictID    (ID in gff mRNA)
  AAsize    : protein aa length
  TRsize    : transcript length 
  Homolog   : protein orthology gene ID / bitscore
              daphnia_hx IDs refer to Daphnia pulex 2010 genes              
  Paralog   : protein paralogy gene ID / bitscore
  Name      : homology-derived gene name, 
              /ARP2_G271 gives arthropods.eugenes.org gene cluster ID
  Flags     : gene quality notes, below
  UnipAC    : Uniprot Accessions
  UnipDE    : Uniprot Description

Flags
10414 Inparalog paralog stronger than ortholog
13216 Ortholog  ortholog stronger than paralog
  238 Insplit   intron split error
  400 Intronerr intron evidence error
   58 Join      possible join of 2 genes
11556 ncRNA     possibly non-coding (or poor gene model)
 7717 NostartAA protein missing M start
 1262 Transposon likely transposon

Note bitscore given for Homolog, Paralog is roughly 2x number of aligned aminos.
For example  m8AUGapi5s00359g106t1 AAsize=150
    Homolog tribolium_TC000621/151       = roughly 50% aligned
            daphnia_hxJGI_V11_302042/243 = roughly 80% aligned
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Examples:

PredictID
        AAsize
        TRsize
        Homolog
        Paralog
        Flags
        Location
        Name
        UnipAC
        UnipDE
        
m8AUGapi5s00359g106t1
        150
        637
        tribolium_TC000621/151,daphnia_hxJGI_V11_302042/243
        none
        Ortholog
        scaffold00359:213191-214000:-
        signal recognition particle kda protein/ARP2_G2042
        P49963
        SRP19,Signal recognition particle 19 kDa protein
m8AUGep24b_p1s00944g237t1
        204
        788
        daphnia_hxAUG25s17g335t1/274
        AUGep24b_p1s00944g238t1/298
        Inparalog
        scaffold00944:1209357-1210519:-
        glutathione s-transferase/ARP2_G271
        P41043
        EC=2.5.1.18,Glutathione S-transferase S1
m8PASAgasmbl_40865
        227
        1624
        daphnia_hxAUG26res17g332t1/348
        PASAgasmbl_97183/261
        ncRNA,Ortholog
        scaffold00944:1217362-1219662:-
        glutathione s-transferase/ARP2_G271
        P41043
        EC=2.5.1.18,Glutathione S-transferase S1
m8AUGep24b_p1s00944g281t1
        2078
        8374
        aphid_m3AUGepir2s880g86t1/2766,daphnia_hxNCBI_GNO_258524/3368
        AUGep24bc10359g684t1/144
        Ortholog
        scaffold00944:1373078-1386309:-
        ferredoxin-dependent glutamate synthase/ARP2_G2419
        Q12680
        EC=1.4.1.14,Glutamate synthase [NADH]