Date: Wed, 4 Apr 2012 15:23:54 -0500 (EST)
From: Don Gilbert <gilbertd>
Message-Id: <201204042023.q34KNsw04133@cricket.bio.indiana.edu>
To: Michael.Pfrender.1@nd.edu, dieter.ebert@unibas.ch,
        gilbertd@cricket.bio.indiana.edu, jcolbour@cgb.indiana.edu,
        kelley.thomas@unh.edu
Subject: Re: D. magna mitochondrial genome


Dieter,

There is scaffold01847 in dmagna20100422assembly that matches the
published D. pulex mito genome, at relatively high identity, and
it is the right size: 14542 bases, vs Dpulex mito 15333 bases.

Daphnia pulex
http://www.ncbi.nlm.nih.gov/bioproject/12756
mito genome
http://www.ncbi.nlm.nih.gov/genome/genomes/288?subset=organelles&details=on&
http://www.ncbi.nlm.nih.gov/nuccore/5835848

-- Don

>dmagna_scaffold01847  length=14542
AAAATAGATAATGATAGTATAAATAAATTTAAATTTCCTAGAGAGTAAAAGATTTTTGTC
TCAAATAAACTAGAGCCCCCCAAGATAAAAGCTGTGAAGGTTATACGTAAATAAAAAAaT
AAGGTAAACAAGCTAGCTAAAATTATAATTAATCTAAAAAaATACCACCCTATTCTTACC
...