Index of /EvidentialGene/daphnia/daphnia_pulex/daphnia_pulex_genes2010

 Name                                      Last modified       Size  

 Parent Directory                          12-Jun-2023 21:42      -  
 daphnia_genes2010_beta3.aa.gz             22-Apr-2010 20:43   9.1M  
 daphnia_genes2010_beta3.annotation.txt.gz 23-Dec-2010 13:01   2.3M  
 daphnia_genes2010_beta3.cds.gz            28-Jan-2011 12:44  15.3M  
 daphnia_genes2010_beta3.gff.gz            23-Apr-2010 22:24   8.0M  
 daphnia_genes2010_beta3.readme.txt        28-Jan-2011 13:14    10k  
 daphnia_genes2010_beta3.tr.gz             27-Jan-2011 12:36  22.7M  
 daphnia_genes2010_beta3_alttr.gff.gz      22-Apr-2010 21:35   130k  
 daphnia_genes2010_examples/               24-Apr-2010 15:08      -  
 daphnia_genes2010_expression/             01-Dec-2010 09:34      -  

Daphnia pulex gene set, built 2010 April.
Further data and details are at Daphnia pulex Genes 2010 of wfleabase.org
> Daphnia genomes at the crossroads, 2010 poster with comments on new genes.
See also Daphnia genomes at the crossroads, 2010 poster with comments on new genes.

Notable stats for Daphnia pulex 2010 (Genes2) vs 2007 (JGI_V11) genes:
  -- Genes2 recovers 82% of protein homology, versus only 42% for JGI
    - Genes2 has 44% best matches among arthropods to HUMAN genes, vs 21% for 2007 Daphnia genes
  -- Genes2 recovers 90% of EST, versus 75% for JGI
  -- Genes2 recovers 66% (5Mb) of 7.6 Mb tile expression not in JGI set (tar_genes)