euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

Index of /EvidentialGene/daphnia/daphnia_pulex/daphnia_pulex_genes2017/rnas

      Name                                Last modified       Size  

[DIR] Parent Directory 27-Nov-2017 23:01 - [TXT] daphnia_pulex_evigene17_methods.txt 18-Apr-2017 15:56 2k [DIR] evg3daplx5nu/ 20-Nov-2017 16:21 - [DIR] evg4daplx6ml/ 20-Nov-2017 16:57 - [DIR] evg4daplx6su/ 20-Nov-2017 16:57 - [DIR] rnasource/ 07-Apr-2017 22:55 - [DIR] scriptevg/ 20-Nov-2017 17:15 -

Three RNA-seq projects for Daphnia pulex (variant populations) are
used to assemble genes.  The rnasource/ contains NCBI SRA entries of thouse
three source projects.  Each source is assembled with Evigene methods,
multiple RNA assemblers and options, then reduced to non-redundant gene
sets, into folders evg3daplx5nu, evg4daplx6ml, evg4daplx6ml.
These three gene sets are then further combined, classified into
the final public gene set, augmented with AUGUSTUS gene predictions
modeled on chromosome assembly daphplx16chr.

Developed at the Genome Informatics Lab of Indiana University Biology Department