euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

About euGenes/EvidentialGene

EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu.

Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification.

All software developed for EvidentialGene is publicly available for use, http://eugenes.org/EvidentialGene/evigene/
The best way to get and update is: ftp ftp://arthropods.eugenes.org/evigene.tar
Archived older (and occasional newer prerelease) Evigene software is here: ftp://arthropods.eugenes.org/evigene_old/

      Name                           Last modified       Size  

[DIR] Parent Directory 06-Jan-2017 16:28 - [DIR] docs/ 09-Nov-2016 14:23 - [TXT] About_EvidentialGene.html 19-Jun-2014 13:50 2k [DIR] scripts/ 14-Oct-2013 14:13 - [TXT] evigene_rnaseq_2012_stats.txt 06-Dec-2012 12:00 9k [TXT] eugenes_proteome_y2k_sizes.txt 03-Dec-2012 01:37 6k [DIR] lib/ 26-Jul-2012 14:33 - [TXT] evigene_rnaseq_denovo2012.txt 07-Jun-2012 21:29 3k [DIR] config/ 27-Dec-2011 12:11 - [TXT] EviGene-results-summary.txt 08-Jun-2011 11:42 10k [TXT] Configure.info 30-Mar-2011 14:23 1k [TXT] Evaluate.info 30-Mar-2011 14:18 1k [TXT] Annotate.info 30-Mar-2011 14:10 1k


Developed at the Genome Informatics Lab of Indiana University Biology Department