euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

Index of /EvidentialGene/evigene/scripts

      Name                             Last modified       Size  

[DIR] Parent Directory 19-Mar-2020 13:11 - [DIR] rnaseq/ 21-Sep-2020 13:20 - [DIR] prot/ 21-Sep-2020 13:20 - [DIR] evgpipe_scriptwork/ 21-Sep-2020 13:20 - [TXT] makeblastscore3.pl 07-Sep-2020 14:38 39k [TXT] makeblastscore.pl 07-Sep-2020 14:38 39k [TXT] genomefeatdens.pl 05-Jul-2020 12:24 16k [DIR] genes/ 01-Jun-2020 13:20 - [TXT] evigene_pubsets.pm 20-May-2020 21:47 93k [TXT] evgpipe_sra2genes4v.pl 20-May-2020 14:40 179k [TXT] evgpipe_sra2genes.pl 20-May-2020 14:40 179k [TXT] cdna_evigenesub.pm 20-May-2020 13:42 62k [TXT] cdna_bestorf.pl 19-Apr-2020 13:55 41k [TXT] evgmrna2tsa4.pl 15-Apr-2020 15:42 2k [TXT] evgmrna2tsa.pl 15-Apr-2020 15:42 2k [TXT] overgenedup.pl 12-Apr-2020 13:17 50k [TXT] equalgene.pl 12-Apr-2020 13:17 50k [TXT] cdna_proteins.pm 28-Mar-2020 13:29 137k [DIR] omcl/ 08-Mar-2020 00:11 - [   ] run_evgsra2genes4v.sh 07-Mar-2020 20:42 3k [TXT] evgpipe_sra2genes2v.pl 13-Feb-2020 22:20 136k [DIR] grid/ 09-Jun-2019 15:16 - [TXT] evigene_settings.pm 12-May-2019 15:05 18k [TXT] overlapfilter15.pl 01-Nov-2018 13:03 28k [TXT] overlapfilter 01-Nov-2018 13:03 28k [TXT] overbestgene2.perl 01-Oct-2018 14:26 77k [TXT] overbestgene1.perl 30-Sep-2018 15:49 43k [TXT] evaluate_predictions.pl 20-Apr-2018 13:42 57k [TXT] bestgenes_update.pl 18-Apr-2018 20:37 98k [TXT] altbest3.pl 09-Mar-2018 14:45 64k [TXT] altbest.pl 09-Mar-2018 14:45 64k [DIR] ests/ 24-Feb-2018 12:57 - [DIR] genoasm/ 27-Jul-2017 11:00 - [TXT] genefindcds2.pl 26-Jul-2017 23:05 174k [TXT] genefindcds.pl 26-Jul-2017 23:05 174k [TXT] cdsgff2genbank.pl 15-Jul-2017 15:57 33k [TXT] blast92gff3.pl 08-Apr-2017 18:10 38k [TXT] aug2mapgff.pl 27-Mar-2017 16:47 16k [TXT] overintron.pl 03-Mar-2017 12:57 21k [TXT] splitMfasta.pl 09-Jul-2016 21:25 3k [TXT] eval_orthogroup_genesets.pl 14-Dec-2015 21:24 32k [TXT] blast2bestgenes.pl 11-Dec-2015 02:08 32k [TXT] cleanmakergff.pl 05-Dec-2015 16:52 12k [TXT] agplift2gff.pl 28-May-2015 13:29 23k [TXT] namecleangb.pl 09-May-2015 16:01 7k [TXT] blast92orthomcl10.pl 25-Aug-2014 19:52 22k [TXT] gmap_to_gff.pl 16-Jun-2014 21:36 37k [TXT] gmap_to_btab.pl 16-Jun-2014 21:36 37k [   ] makealt.sh 22-Sep-2013 00:56 3k [TXT] annotate_predictions.pl 07-Sep-2013 21:05 33k [TXT] evgrna2genbanktsa.pl 21-Jun-2013 13:00 37k [TXT] evigene2genbanktbl.pl 27-Mar-2013 12:34 88k [TXT] eval_orthodb_groups.pl 10-Oct-2012 21:27 35k [TXT] pindel2gff.pl 03-Sep-2012 21:48 2k [TXT] genereplacex.pl 30-Aug-2012 16:19 17k [TXT] orthomclsum.pl 26-Aug-2012 14:49 9k [TXT] pasa2evigff.pl 19-Aug-2012 21:28 10k [TXT] gff2ggb.pl 28-Jul-2012 13:53 3k [TXT] efetchests.pl 18-Jul-2012 20:34 4k [TXT] uniprotfetchbeta.pl 23-Jun-2012 14:14 22k [TXT] estsamcover.pl 17-Jun-2012 19:46 16k [   ] maketraa2.sh 09-Jun-2012 13:29 6k [TXT] estblastcover.pl 09-May-2012 16:09 15k [TXT] genestructab.pl 25-Mar-2012 17:02 24k [TXT] snp2cds.pl 03-Jan-2012 23:00 13k [TXT] snpcds.pl 29-Dec-2011 12:24 8k [TXT] joincheck2.pl 16-Nov-2011 13:26 24k [TXT] gmapgff2btab.pl 05-Nov-2011 13:49 10k [TXT] asm21align.pl 27-Oct-2011 11:56 29k [TXT] genomewigdens.pl 08-Oct-2011 14:34 2k [TXT] geneupdcompare.pl 07-Oct-2011 15:25 25k [   ] inmatescore.sh 28-Sep-2011 13:53 6k [TXT] recombine_partial_outputs.pl 17-Sep-2011 13:38 8k [TXT] partition_GFF_qnd.pl 17-Sep-2011 13:24 10k [TXT] gff2bed.pl 07-Sep-2011 23:35 1k [TXT] process_exonerate_gff3.perl 03-Sep-2011 17:52 20k [TXT] gmapgffclean.pl 18-Aug-2011 22:02 1k [TXT] inmatescore.pl 16-Aug-2011 14:29 30k [TXT] intronscore.pl 16-Aug-2011 13:36 12k [TXT] evigene3compare.pl 07-Aug-2011 12:44 35k [TXT] overjoinspan.pl 23-Jul-2011 17:33 24k [TXT] overlapjoins.pl 23-Jul-2011 17:07 12k [TXT] geneuniq.pl 18-Jun-2011 18:05 8k [TXT] bestgenes_puban.pl 06-Jun-2011 13:50 33k [   ] bestnotrivial.sh 17-May-2011 11:57 4k [TXT] countblatalign.pl 14-May-2011 13:11 9k [TXT] evigff2gtf.pl 11-Apr-2011 16:53 1k [TXT] evigene_eval.conf 03-Apr-2011 13:21 4k [TXT] overtabulate.pl 23-Mar-2011 10:48 9k [   ] makegenescore.sh 22-Feb-2011 13:31 1k [TXT] fagff2sam.pl 27-Dec-2010 20:07 2k [TXT] mpile2tiletab.pl 30-Nov-2010 19:17 4k [   ] evalpred.sh 18-Oct-2010 16:23 3k [   ] anaugmap.sh 18-Oct-2010 15:17 3k [TXT] evaltab.pl 05-Oct-2010 12:31 5k [   ] makeseqfiles.sh 04-Oct-2010 21:21 1k [TXT] efetchncbi.pl 02-Oct-2010 13:56 4k [   ] exonr2gff3.sh 05-Sep-2010 14:27 1k [TXT] gff2hints.pl 12-Feb-2010 16:24 27k [TXT] blat2hints.pl 01-Nov-2009 07:57 30k [TXT] ncbi_mapview2gff.pl 17-Oct-2009 13:50 6k [TXT] overlapeval.pl 12-Sep-2009 21:14 22k [TXT] partition_GFF_add.pl 02-Jul-2008 15:13 10k [TXT] partition_GFF_genome.pl 21-Jan-2008 20:03 14k [TXT] recombine_GFF_partial_outputs.pl 07-Jan-2008 18:55 3k [TXT] blat2gff.pl 21-Oct-2007 15:54 8k [TXT] Fasta_reader.pm 30-Mar-2007 11:29 3k


Developed at the Genome Informatics Lab of Indiana University Biology Department