evigene22jan14.tar 
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extract to evigene/ with: tar -xf evigene22jan14.tar

Public release of EvidentialGene/Gnodes software
includes what I believe is a stable public release for Gnodes.
Gnodes is described at http://arthropods.eugenes.org/EvidentialGene/other/gnodes/
with a paper in draft form soon to be available.  

Please comment to me/project if you try out Gnodes, evidentialgene@googlegroups.com 
or gilbertd@indiana.edu If you have problems with it, they will be fixed as soon as possible.

Gnodes is a measuring tool for both chromosome assemblies and the genes there-in, and RNA-assembled genes.
One of its most useful aspects is a measure of gene-duplications that is fully evidence-based, resting
upon gDNA coverage depth analyses, for unique conserved, 1-copy genes, and then all the other genes, and 
remainder of genome (tranposons, repeats, etc).  

This description evigene/docs/evigene_gnodes_help.txt in evigene22jan14.tar should get you started.
evgpipe_sra2genes4v.pl is update to add local cluster 'sra2genes_setup.sh' to pipeline scripts.