-------- Arabidopsis PacBio RNA --------- https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA306427 # sra_rnaseqpb_201701brief.tsv SRR3655756 2016-06-13 54494 1372043933 4425 SRX1583871 1384.A SRP070062 PRJNA306427 SAMN04456597 3702 Arabidopsis thaliana 1384.A na SRR3655757 2016-06-13 54494 749863951 2405 SRX1583872 1384.B SRP070062 PRJNA306427 SAMN04456598 3702 Arabidopsis thaliana 1384.B na SRR3655758 2016-06-13 54494 210593936 753 SRX1583873 1384.C SRP070062 PRJNA306427 SAMN04456599 3702 Arabidopsis thaliana 1384.C na SRR3655759 2016-06-13 54494 1276931799 4153 SRX1583874 1583.A SRP070062 PRJNA306427 SAMN04456600 3702 Arabidopsis thaliana 1583.A na SRR3655760 2016-06-13 54494 834836481 2798 SRX1583875 1583.B SRP070062 PRJNA306427 SAMN04456601 3702 Arabidopsis thaliana 1583.B na SRR3655761 2016-06-13 54494 675473182 2238 SRX1583876 1583.C SRP070062 PRJNA306427 SAMN04456602 3702 Arabidopsis thaliana 1583.C na .. curl -L -sRO http://sra-download.ncbi.nlm.nih.gov/srapub_files/SRR3655756_SRR3655756_hdf5.tgz curl -L -sRO http://sra-download.ncbi.nlm.nih.gov/srapub_files/SRR3655758_SRR3655758_hdf5.tgz -------- Arabidopsis Illumina RNA, same project/samples --------- https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA323955 grep PRJNA323955 sra_rnaseq_sharedpbill.ill.tsv n=66 SRR3664424 2016-10-21 75757922 18939480500 10117 SRX1842946 Mature3 SRP076525 PRJNA323955 SAMN05194607 3702 Arabidopsis thaliana Mature3 na SRR3664425 2016-10-21 80855958 20213989500 10984 SRX1842947 Meristem1 SRP076525 PRJNA323955 SAMN05194608 3702 Arabidopsis thaliana Meristem1 na SRR3664426 2016-10-21 82269174 20567293500 11477 SRX1842948 Meristem2 SRP076525 PRJNA323955 SAMN05194609 3702 Arabidopsis thaliana Meristem2 na SRR3664427 2016-10-21 84506363 21126590750 11123 SRX1842949 Meristem3 SRP076525 PRJNA323955 SAMN05194610 3702 Arabidopsis thaliana Meristem3 na grep PRJNA323955 sra_rnaseq_sharedpbill.pb.tsv n=20 (10 raw data, 10 are reduced/cleaned seq?) SRR5047906 2016-12-22 163482 2044886541 6579 SRX2370362 6 SRP076525 PRJNA323955 SAMN06041050 3702 Arabidopsis thaliana PacBio whole root sequencing na SRR5047907 2016-12-22 163482 2361736611 7390 SRX2370363 8 SRP076525 PRJNA323955 SAMN06041050 3702 Arabidopsis thaliana PacBio whole root sequencing na SRR5047908 2016-12-22 163482 2112865421 6744 SRX2370364 10 SRP076525 PRJNA323955 SAMN06041050 3702 Arabidopsis thaliana PacBio whole root sequencing na https://www.ncbi.nlm.nih.gov/biosample/SAMN06041050 virginia tech, Song Li; 2016-11-18 https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA323955 cell type specific RNAseq data of Arabidopsis root ---- PAG2015 P1220 Integrated Analysis and Annotation of Splicing Variants and Antisense Transcripts Using RSVP and NASTI-seq Date: Monday, January 12, 2015 Song Li , Virginia Tech, Blacksburg, VA PAG2017 W933: Systems Biology and Ontologies Integrated Transcriptome and Proteome Analyses Reveal Cell Type-Specific Regulation of Alternative Splicing in Arabidopsis Song Li, Virginia Tech, Blacksburg, VA ----------------------- papers http://dx.doi.org/10.1016/j.devcel.2016.10.012 http://www.sciencedirect.com/science/article/pii/S153458071630750X Raw read data have been deposited in the NCBI SRA database under BioProject PRJNA323955 (https://www.ncbi.nlm.nih.gov/bioproject/323955).