all.cgb.bam = cgb*.bam Aug 30 22:53 cgb_ca10_1-mars11s8p.bam Aug 21 00:02 cgb_ca1_1.bam Aug 21 00:07 cgb_ca2_1.bam Aug 31 06:31 cgb_ca3_1-mars11s8p.bam Aug 21 00:11 cgb_ca4_1.bam Aug 21 00:17 cgb_ca5_1.bam Aug 21 00:21 cgb_ca6_1.bam Aug 21 00:25 cgb_ca7_1.bam Aug 21 00:31 cgb_ca8_1.bam Aug 21 12:20 cgb_ca9_1.bam all.nc1.bam = ncgr{0909,0910}*.bam Aug 30 18:12 ncgr090922_7_1-mars11s8p.bam Aug 30 18:55 ncgr090922_8_1-mars11s8p.bam Aug 30 16:57 ncgr090929_1_1-mars11s8p.bam Aug 30 18:11 ncgr090929_2_1-mars11s8p.bam Aug 30 19:13 ncgr090929_3_1-mars11s8p.bam Aug 30 17:10 ncgr090929_4_1-mars11s8p.bam Aug 30 18:19 ncgr090929_6_1-mars11s8p.bam Aug 30 19:19 ncgr090929_7_1-mars11s8p.bam Aug 30 20:07 ncgr090929_8_1-mars11s8p.bam Aug 30 16:41 ncgr091005_1_1-mars11s8p.bam Aug 30 17:30 ncgr091005_2_1-mars11s8p.bam Aug 30 18:13 ncgr091005_3_1-mars11s8p.bam Aug 30 19:16 ncgr091005_4_1-mars11s8p.bam Aug 30 20:05 ncgr091005_6_1-mars11s8p.bam all.nc2.bam = ncgr090[567]*.bam Aug 30 16:36 ncgr090511_1_1-mars11s8p.bam Aug 30 17:34 ncgr090511_2_1-mars11s8p.bam Aug 30 16:20 ncgr090609_1_1-mars11s8p.bam Aug 30 16:53 ncgr090609_2_1-mars11s8p.bam Aug 30 17:38 ncgr090609_3_1-mars11s8p.bam Aug 30 18:17 ncgr090609_4_1-mars11s8p.bam Aug 30 19:29 ncgr090609_6_1-mars11s8p.bam Aug 30 16:31 ncgr090714_2_1-mars11s8p.bam Aug 30 16:55 ncgr090714_3_1-mars11s8p.bam Aug 30 17:22 ncgr090714_4_1-mars11s8p.bam Aug 30 17:50 ncgr090714_6_1-mars11s8p.bam Aug 30 18:19 ncgr090714_7_1-mars11s8p.bam Aug 30 18:45 ncgr090714_8_1-mars11s8p.bam Aug 29 16:41 ncgr090728_7_1-mars11s8p.bam Aug 29 17:38 ncgr090728_8_1-mars11s8p.bam ======= NcgrID Group Total Mapped Properly paired ncgr090511_1 Matina_1 20480787 19443480 (94.94%) 18054708 (88.15%) ncgr090511_2 Matina_2 33241964 31567193 (94.96%) 29443990 (88.57%) ncgr090609_1 1_SCA6 16584768 13630752 (82.19%) 13438732 (81.03%) ncgr090609_2 2_U48 18103547 17086240 (94.38%) 16555932 (91.45%) ncgr090609_3 3_GU255_P 23194475 21545664 (92.89%) 20662251 (89.08%) ncgr090609_4 4_IMC51 18411596 17248544 (93.68%) 16335132 (88.72%) ncgr090609_6 5_AMAZ_15_15 20575318 19797741 (96.22%) 18037452 (87.67%) ncgr090714_2 COC3335 14705946 13805680 (93.88%) 13202298 (89.78%) ncgr090714_3 NAP_30 14127879 13033139 (92.25%) 12692099 (89.84%) ncgr090714_4 CRIOLLO_13 14105999 13323499 (94.45%) 12922516 (91.61%) ncgr090714_6 PA_120_B 17519951 16001391 (91.33%) 15534374 (88.67%) ncgr090714_7 PA_150 16640689 15726383 (94.51%) 15097710 (90.73%) ncgr090714_8 U26 16085479 15282384 (95.01%) 14915572 (92.73%) ncgr090728_7 Pound_5C_a 22356061 19876486 (88.91%) 18511771 (82.80%) ncgr090728_8 Pound_7_2 24912934 22593605 (90.69%) 20714117 (83.15%) ncgr091005_6 EBC_148_leaf_1 14623193 13194228 (90.23%) 12523495 (85.64%) -- Pistil_x_Pound NcgrID Group Total Mapped Properly paired ncgr090922_7 Pistil_1 27957870 22259567 (79.62%) 20298560 (72.60%) ncgr090922_8 Pistil_2 28006092 22927875 (81.87%) 20287548 (72.44%) ncgr090929_1 Pistil_3 19811594 14418304 (72.78%) 0 (nan%) ncgr090929_2 Pistil_4 43813792 38015761 (86.77%) 33371148 (76.17%) ncgr090929_3 Pistil_5 49740617 43958973 (88.38%) 38398564 (77.20%) ncgr090929_4 Pistil_6 42900783 33345213 (77.73%) 28885632 (67.33%) ncgr090929_6 Pistil_7 41215621 35240433 (85.50%) 31054088 (75.35%) ncgr090929_7 Pistil_8 45415987 39539183 (87.06%) 34924038 (76.90%) ncgr090929_8 Pistil_9 36318759 28175197 (77.58%) 25751718 (70.90%) ncgr091005_1 Pistil_10 27697734 19632563 (70.88%) 17686200 (63.85%) ncgr091005_2 Pistil_11 38647049 31940616 (82.65%) 27558826 (71.31%) ncgr091005_3 Pistil_12 35425040 24823640 (70.07%) 21415486 (60.45%) ncgr091005_4 Pistil_13 35563504 29914828 (84.12%) 25699354 (72.26%)