EvidentialGene gene assembly for Zea mays corn plant
assembled from the published RNA-seq of
doi:10.1038/srep04519, 2014, from maize seedling, 250 M Illumina pairs.
 Name Last modified Size
![[DIR]](/icons/back.gif) Parent Directory 26-Jan-2017 21:02 -
![[ ]](/icons/compressed.gif) evg4corn160901.aa.gz 30-Aug-2016 16:03 64.7M
evg4corn160901.cds.gz 30-Aug-2016 16:04 101M
evg4corn160901.mrna.gz 30-Aug-2016 16:05 138M
evg4corn160901.gff3.gz 30-Aug-2016 16:42 53.3M
![[TXT]](/icons/text.gif) evg4corn160901.aa.qual 31-Aug-2016 14:09 27.3M
evg4corn160901.mediatorp2.tab 31-Aug-2016 17:08 3k
evg4corn160901.maploc.txt 31-Aug-2016 22:55 19.4M
evg4corn160901.consv_ohnologs.tab 31-Aug-2016 22:58 443k
evg4corn160901.ann.txt.gz 01-Sep-2016 15:38 13.6M
![[DIR]](/icons/folder.gif) evg4corn_info/ 01-Sep-2016 16:56 -
examples/ 02-Sep-2016 18:49 -
Data contents:
Gene sequnces, with suffix
aa = protein, cds = coding seq, mrna = transcript seq,
aa.qual = table of protein IDs, sizes
Gene annotation table, ann.txt, with columns
Public_mRNA_ID Object_IDs Class AAqual
AAref
Chromosome_map
TrLen CDSoff Dbxref Namealign Product_Name
...
Zeamay4eEVm000001t1 Zeamay4EVm000001t1,tidbcornhi12mer3ridk47Loc24550 main 5425,97%,complete
aaref:10109,Sobic.009G173600.1.p,refbest,igloc:Ig000001
chrmap:98a,16278l,59x,NC_024464.1:154250572-154293534:+
16729 35-16312 Sobic.009G173600.1.p, 100 ATPases
Zeamay4eEVm000002t1 Zeamay4EVm000002t2,tidbcornhi12mer3ridk77Loc1 main 5066,96%,complete
aaref:9470,Sobic.007G098500.1.p,igloc:Ig000002
chrmap:70a,15201l,14x,NC_024465.1:70639407-70669113:+
15723 208-15408 Sobic.007G098500.2.p, 100 auxin transport protein (BIG)
..
where AAref is packed field of bitscore,referID,refqual,iglocID
and Chromosome_map is packed field of align%,length,exons,chr_gene_span
consv_ohnologs.tab = table of ohnolog high identity paralogs on duplicated chromosomes (ref:pnas2011schnable)
mediatorp2.tab = table of Mediator of RNA polymerase II transcription subunit genes
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