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Index of /EvidentialGene/vertebrates/atlantic_killifish/RNAs/kf2evg367mixx11

      Name                              Last modified       Size  

[DIR] Parent Directory 04-Jan-2014 16:38 - [TXT] kfish2evg367mixx.mrna2tsa.info 16-Sep-2013 01:09 1k [TXT] kfish2evg367mixx11pub.align.tab 25-Sep-2013 14:14 25.2M [   ] kfish2evg367mixx11pub.gff.gz 25-Sep-2013 14:15 59.1M [TXT] kfish2evg367mixx11pub.idclass.tab 29-Sep-2013 14:44 43.9M [TXT] kfish2evg367mixx11pub.readme.txt 20-Oct-2013 15:01 1k [   ] kfish2evg367mixx11pub2.aa.gz 29-Sep-2013 15:13 57.8M [   ] kfish2evg367mixx11pub2.cds.gz 29-Sep-2013 15:16 95.3M [   ] kfish2evg367mixx11pub2.mrna.gz 29-Sep-2013 15:15 121M [TXT] mixx11pub2miss.idtab 28-Nov-2013 13:35 203k [   ] mixx11pub2miss.pubid.aa.gz 28-Nov-2013 14:21 645k [   ] mixx11pub2miss.pubid.cds.gz 28-Nov-2013 14:19 1.0M [   ] mixx11pub2miss.pubid.mrna.gz 28-Nov-2013 14:19 1.4M


Killifish mRNA assembly set, kfish2evg367mixx11pub

mRNA inputset: 723,555 kfish2evg367mixx from subset assemblies:
  136132 Fungr1EG3, 356953 Funhe2E6b, 175596 Funhe2Eq7, 54874 Funhe2Emap3

mRNA classification:
Class           cull    drop    okay    Class notes
----------------------------------------------------------------------
althi           0       35078   51301   # high identity exon alternate
althi1          0       122038  53038   # higher idenity alternate
altmap          0       8741    10828   # alternate from genome mapping
altmid          0       10694   10413   # mid identity alternate (may be paralog)
main            0       1713    45048   # main transcript, longest with alts
mainsingle      0       40406   9629    # main transcript, no alternate
frag1exon       16482   0       0       # fragment single exon, no homology
fragalthi       0       65834   0       # fragment high ident alternate
fragaltmid      0       21182   3025    # fragment mid ident alternate
fragnearg       31015   0       0       # alt-exon near gene, but unattached
fragtrivia      85597   0       0       # trivially short, no homology
fragnopath      6342    0       0       # short, no genome map, no homology
----------------------------------------------------------------------
total           139436  305686  183282
  okay= keep, drop= uninformative excess, cull= uninteresting excess

Constructed using methods of
http://arthropods.eugenes.org/EvidentialGene/about/EvidentialGene_trassembly_pipe.html



Developed at the Genome Informatics Lab of Indiana University Biology Department