TABLE G3.  SPECIES gene sets compared for gene evidence recovery

G3a.  Conserved genes in pig gene sets (vertebrate conserved, BUSCO)
Geneset	Align	Full	Frag	Miss   Best
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Evigene	447	2568	10	 8     776 (30%),  1730 same (67%)
NCBI	440	2567	 2	17      80 ( 3%)
Ensembl 431	2552	20	14	na
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vertebrate conserved genes, BUSCO of OrthoDB v9, n=2586
Align = average alignment (aa) to ref proteins, 
Full  = Complete align to conserved proteins, Frag = fragment alignment, Miss = no alignment
Best =  pairwise count of greater alignment to conserved reference
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