TABLE G3. SPECIES gene sets compared for gene evidence recovery G3b. Reference Human (Homo_sapiens, NCBI 2018 RefSeq) Geneset Found Align Frag Best ------------------------------------------ Evigene 99.3% 96.0 1.7 20 55% equal NCBI 99.3% 97.2 0.6 25 ------------------------------------------ for 37,883 human protein isoforms that are uniquely found in either pig gene set -------------------------------- * use bitscore compare, from blastp -query human -db pig2genesets * note scores are bitscore not align score (i.e. ~2x align) ==> aaeval/human/pig2genesets-human18nc10a.bitsdiff #stat a,b=Susscr4,pig18nc, nref=37883, refhit=37883, dupref=41860, score=Bits,2 #stat alndiff(a-b)=-23, align%(a,b)=96 97.2, align(a,b)=1097.4 1121.3, sumd=-904416 #outsize[<50%,>150%] (atiny,abig,btiny,bbig)=668,1.7% 1761,4.6% 247,0.6% 1416,3.7% #best (equal,abest,bbest)=20655,54.5% 7660,20.2% 9568,25.2% #best (afound,bfound,acov95,bcov95)=37627,99.3% 37643,99.3% 34177,90.2% 35188,92.8%