Index of /EvidentialGene/vertebrates/zebrafish

 Name                    Last modified       Size  

 Parent Directory        25-Mar-2019 14:06      -  
 zebrafish17evigene/     26-Apr-2018 20:50      -

EvidentialGene : zebrafish gene improvements

**Summary of conserved vertebrate genes in 3 zebrafish gene sets**
Gene set	Align	Complete	Fragment	Missing
Evigene17	443.1	2572	5	9
NCBI16	433.8	2554	13	19
Ensembl17	426.8	2510	47	29

Examples of zebrafish genes improved in Evigene reconstruction, versus NCBI EGAP RefSeq gene set of 2016, and Ensembl gene set of 2017 (ZFIN uses this). The first set shows conserved single-copy vertebrate gene families measured with BUSCO OrthoDB v9. The following set shows (non-single-copy) fish genes conserved in 2+ related species.

For several of the missing conserved genes, there exists a gene model, that either has an abnormally short protein, or no protein (i.e. non-coding transcript models). For some cases, and others not shown, the Evigene complete ortholog gene is poorly mapped, or unmapped, to zfish GRCz10 chromosome assembly. For other cases, the Evigene model is fully located on chromosome assembly.

Example gene map views

Developed at the Genome Informatics Lab of Indiana University Biology Department