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DroSpeGe: Acyrthosiphon Pea aphid genome data

Genome annotation for pea aphid, Acyrthosiphon pisum.

BLAST ... GBrowse map ... [?] Aphid gene annotations

Search by Fields, and see this Aphid Genes Search example for help finding genes of interest.

This genome annotation was done with currently available, open source genome annotation software. Analyses were run on TeraGrid, as a test case for a GMOD Genome Grid community genome analysis system. These data are BLAST-able and GBrowse-able . The data are also at ftp://eugenes.org/eugenes/genomes/aphid/

-- Don Gilbert, June 2008

      Name                             Last modified       Size  Description

[DIR] Parent Directory 16-Aug-2011 12:22 - [TXT] aphid-search-help.txt 31-Jul-2008 14:45 6k [DIR] aphid_dggsupl/ 24-Apr-2009 16:16 - [TXT] bmc_pea_aphid_genome_release.txt 16-Jun-2008 00:28 7k [TXT] dgil_genomegrid_methods.txt 15-Aug-2008 13:21 2k [DIR] dupgenes/ 23-Sep-2008 20:53 - [DIR] fasta/ 16-Feb-2009 00:58 - [DIR] geneset1/ 16-Aug-2011 12:28 -

This directory has computed annotations for the first draft genome sequence release (Acyr_1.0) of the pea aphid, Acyrthosiphon pisum. These data have been produced at the Genome Informatics Lab, Indiana University, by Don Gilbert, June 2008. Find out more at http://insects.eugenes.org/species/

16-jun-2008 NOTICE: there is a SCAFFOLD-ID mismatch between NCBI Gnomon gene models and the genome assembly used here. This will be corrected shortly by changing scaffold IDs to new ones. The gene models can be used, but scaffold IDs in GFF location files will change soon.

Contents in brief:



Developed at the Genome Informatics Lab of Indiana University Biology Department