OrthoMCL clustering of proteins among arthropod genomes

See this Summary of Arthropod ortholog clusters Search Arthropod gene clusters ARP1: (2008.08)   ...   ARP2: (2009.12) for:   >Limit to genes in these taxa Mosquitoes any None 1 1+ 2+ 1 or 0 Fruitflies any None 1 1+ 2+ 1 or 0 Hymenoptera any None 1 1+ 2+ 1 or 0 Other insects any None 1 1+ 2+ 1 or 0 Other Ar'pods any None 1 1+ 2+ 1 or 0 >Limit to genes in these species Aedes any None 1 1+ 2+ 1 or 0 Anopheles any None 1 1+ 2+ 1 or 0 Culex any None 1 1+ 2+ 1 or 0 DrosMel any None 1 1+ 2+ 1 or 0 DrosMoj any None 1 1+ 2+ 1 or 0 DrosPse any None 1 1+ 2+ 1 or 0 Apis any None 1 1+ 2+ 1 or 0 Nasonia any None 1 1+ 2+ 1 or 0 Bombyx any None 1 1+ 2+ 1 or 0 Tribolium any None 1 1+ 2+ 1 or 0 Aphid any None 1 1+ 2+ 1 or 0 Pediculus any None 1 1+ 2+ 1 or 0 Daphnia any None 1 1+ 2+ 1 or 0 Ixodes any None 1 1+ 2+ 1 or 0

Phylogenetic trees: Fitch:phenogram or Neighor:tree >Newick tree of Arthropods # Arthropod gene group phylogeny (v. ARP2, 2010.01, D. Gilbert) # from OrthoMCL/BlastP analysis of 14 species proteomes, # distance matrix of best recip orthologs (using formula D2 of # doi:10.1093/nar/gki181), followed by Phylip Fitch distance trees, # J=250, rooted at Ixodes ((((((( ((DrosMel:0.16946,DrosPse:0.27553):0.03808,DrosMoj:0.29297):0.37569, ((Culex:0.28236,Aedes:0.20645):0.14114,Anopheles:0.27578):0.19011):0.10815, Bombyx:0.57957):0.01218,Tribolium:0.46032):0.02573, (Apis:0.32155,Nasonia:0.56158):0.17971):0.01871, Pediculus:0.41209):0.02903,Aphid:0.81649):0.10212, Daphnia:0.75698,Ixodes:0.72260);

 Name                     Last modified       Size  Description

 Parent Directory         06-Dec-2012 12:53      -  
 ARP1/                    24-Jul-2011 23:13      -  
 ARP2/                    24-Jul-2011 23:06      -  
 ARP3x/                   25-Feb-2012 13:12      -  
 arthropod-arp2-pheno.pdf 04-Jan-2010 17:01     2k  
 arthropod-arp2-pheno.png 04-Jan-2010 17:07    44k  
 arthropod-arp2-tree.pdf  04-Jan-2010 17:02     1k  
 arthropod-arp2-tree.png  04-Jan-2010 17:06    84k  
 genetrees/               26-Jul-2011 22:21      -  

Citations:
  D. Gilbert, OrthoMCL clustering among 14 arthropod proteomes (ARP2).
  http://arthropods.eugenes.org/arthropods/
  Dec. 2009, gilbertd@indiana.edu

  D. Gilbert, OrthoMCL clustering among 13 arthropod proteomes (ARP1).
  http://insects.eugenes.org/arthropods/
  Aug. 2008, gilbertd@indiana.edu

  OrthoMCL: http://www.orthomcl.org/
   Li Li, Christian J. Stoeckert, Jr., and David S. Roos
   OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Res. 2003 13: 2178-2189.
   Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, and David S. Roos
   Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes. PLoS ONE 2007 2(
4): e383.